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Role of chemical shift imaging in characterizing musculoskeletal soft tissue tumors

*Corresponding author: Rajesh Botchu, Department of Musculoskeletal Radiology, Orthopedic Hospital, Birmingham, United Kingdom. drrajeshb@gmail.com
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Received: ,
Accepted: ,
How to cite this article: Gavvala S, Saran S, Petrou E, Jenko N, Nischal N, Botchu R. Role of chemical shift imaging in characterizing musculoskeletal soft tissue tumors. Indian J Musculoskelet Radiol. doi: 10.25259/IJMSR_20_2025
Abstract
Objectives:
The use of chemical shift imaging (CSI) for characterizing localized and diffuse bone marrow lesions is well established. However, the CSI characteristics of soft-tissue musculoskeletal tumors have not yet been established. The aim of this study is to describe the CSI features of soft-tissue tumors and establish their potential clinical usefulness.
Material and Methods:
Magnetic resonance imaging with CSI of eighty histopathologically proven musculoskeletal soft tissue tumors was retrospectively assessed. In-phase and out-of-phase signal intensity was measured to calculate the percentage reduction in signal (drop-out). Signal drop-out was correlated with histopathological diagnosis.
Results:
Based on the histopathological diagnosis, 80 patients in our study were grouped in 5 cohorts comprising lipomatous, lipomatous variant, neural, myxoid, and other soft tissue tumors. The mean signal drop was highest in the lipoma variant cohort (−27.4 ± 18.5%), followed by the lipoma cohort (−12.4 ± 5.9%), the neural tumors cohort (−2.7 ± 5.2%), the myxoid tumors cohort (−1.9 ± 5.2%), and the other soft tissue tumor cohort (0.8±18.3%). The difference was statistically significant (P < 0.001). Signal dropout demonstrated good ability to identify lipoma variants with an area-under-the curve of 0.85 (95% confidence interval [CI] = 0.69–0.99). There was excellent intra-observer reliability (intra-class co-efficient [ICC] = 0.996, 95% C.I. 0.990–0.998) and inter-observer reliability (ICC 0.990, 95% C.I. 0.971–0.996).
Conclusion:
Lipoma variants demonstrate increased signal dropout compared to other soft-tissue tumors; CSI shows promise in augmenting the diagnostic pathway in the evaluation of soft tissue tumors.
Keywords
In-phase
Lipoma
Lipoma variant
Opposed-phase
Signal drop
INTRODUCTION
Magnetic resonance imaging (MRI) plays a vital role in the assessment and diagnosis of musculoskeletal soft tissue tumors. The role of MRI is not only limited to delineating the anatomical extent of the tumor but also provides details on the composition of the tumor. This often allows a skilled radiologist to grade the aggressiveness of the tumor, which is very important for pre and post-treatment evaluation. Some of the functional sequences that are used in the musculoskeletal system include chemical shift imaging (CSI), diffusion-weighted imaging, perfusion imaging, diffusion tensor imaging, and MR spectroscopy.[1] CSI is a technique of fat suppression and is routinely used for the detection and characterization of abdominal lesions (hepatic, renal, and adrenal).[2-4] In the musculoskeletal system, CSI is well established for the characterization of localized and diffuse bone marrow lesions, mainly in the spine.[5,6] In CSI, in-phase and opposed-phased imaging sequences are acquired based on the principle of detecting different precessional frequencies of water and fat to detect areas of fatty tissue. When fat and water protons are present in the same voxel and they are imaged in in-phase sequence, their signals will add up and increase the overall signal intensity of that particular voxel, while in opposed-phase sequence, their signal will cancel each other out and will result in an overall decrease in signal intensity.
In the spine, CSI is used to differentiate fatty marrow replacement from pathological marrow infiltration. Therefore, in case of fatty marrow replacement, signal intensity in opposed-phase sequence will reduce, whereas in pathological marrow infiltration, this will not be the case.[7] The role of CSI has been studied in the past in cases of adrenal and renal tumors.[8-10] Some authors have also evaluated the role of CSI in assessing musculoskeletal tumors.[11-13] However, data regarding the characterization of soft tissue tumors using CSI are limited.
CSI can be applied in characterizing musculoskeletal soft tissue lesions based on the same principle to detect the presence of fat cells and forms the hypothesis of our study. The primary objective of our study was to determine the extent of signal drop in histopathological proven cases of soft tissue tumors of the musculoskeletal system. Our secondary objective was to determine the diagnostic accuracy of CSI in predicting the histopathological diagnosis of musculoskeletal soft tissue tumor.
MATERIAL AND METHODS
This retrospective cross-sectional study was conducted at a tertiary orthopedic oncology center over 1-year period. Local ethical committee approval was obtained. Our institutional oncology database was retrospectively searched with keywords “lump,” “oncology,” and “soft tissue mass.” Inclusion criteria were patients with histopathological diagnosed musculoskeletal soft tissue tumors with availability of MRI having CSI done within 6 months of biopsy. Patients with an MRI performed more than 6 months from the date of biopsy and those without a CSI sequence were excluded. Infective, post-traumatic and postoperative cases were also excluded. All images were acquired on Siemens 3T Skyra or Siemens 1.5T Sola (Erlangen, Germany). The parameters for CSI were field of view 340, Repetition Time (TR) 137, TE in phase −2.38 ms, TE out of phase −4.87 ms, slice thickness 3 mm, and flip angle 70°.
Applying inclusion and exclusion criteria, a total of 80 musculoskeletal soft tissue tumors that were discussed in our regional sarcoma MDT over the past 9 months were identified and collected for analysis. Based on the histopathological diagnosis, patients were grouped in 5 cohorts (lipomatous, lipomatous variant, neural, myxoid, and other soft tissue tumors).
Image analysis
MRI was read by one consultant radiologist and one musculoskeletal radiology trainee who were blinded to the histopathological diagnosis of the tumors. One region of interest of the tumor was drawn on the axial or sagittal images in in-phase and opposed-phase sequences and signal intensity value was noted and used for the calculation of signal drop percentage. The region of interest was identical (same size and same level) for in and opposed sequences. In some cases, multiple regions of interest were drawn but these were similar in and opposed sequences. The average of the readings from the two readers was finally used for statistical analysis. Measurements were also repeated after an interval of 1 week and used to calculate the interobserver and intraobserver agreement. The findings were correlated with the histopathological diagnosis achieved by excisional or image-guided biopsy.
Statistical analysis
Data were entered in the Microsoft Excel sheet and then analyzed using STATA (Stata statistical software: Release 18, StataCorp LLC, USA) software. Descriptive statistics of the five cohorts were performed. One-way analysis of variance was used to determine whether differences between cohorts were significant. Individual groups were compared with post hoc analysis with Sidak’s correction, which accounts for multiple comparisons. Intra-class co-efficient (ICC 2, 1) was used to calculate inter- and intraobserver reliability. The “P” value of <0.05 was considered significant.
RESULTS
Based on the histopathological diagnosis, 80 patients were grouped in 5 cohorts (lipomatous, lipomatous variant, neural, myxoid, and other soft tissue tumors). There were 44 males and 36 females with an average age 51.2 (± 17.4) years. The lipoma cohort included 22 patients, the lipoma variant cohort included 8 patients, 11 neural tumors, the myxoid tumor cohort had 8 patients, and the other soft-tissue tumors cohort included 31 patients. The mean signal drop in the lipoma cohort was −12.4 % (±5.9), in the lipoma variant cohort was −27.4% (±18.5), in the neural tumors cohort was −2.7% (±5.2), in the myxoid tumors cohort was −1.9 % (±5.2), and in the other soft tissue tumor cohort was 0.8 % (±18.3). A summary of mean measurements is provided in [Table 1 and Figures 1-5].
| Tumor cohort | Number of patients (total=80) | Average age (years) (Mean ± SD) | In-phase signal intensity (Mean ± SD) |
Out-of-phase signal intensity (Mean ± SD) |
Signal drop percentage (%) (Mean ± SD) |
|---|---|---|---|---|---|
| Lipoma | 22 | 57.7±14.1 | 447.1±239.1 | 392.3±215.3 | −12.40±5.90 |
| Lipoma variant | 8 | 53.3±17.5 | 326.9±218.6 | 251.3±199.9 | −27.40±18.60 |
| Neural tumor | 11 | 57.1±17.2 | 264.7±149.9 | 255.3±142.9 | −2.70±5.30 |
| Myxoid tumor | 8 | 53.4±15.1 | 89.5±21.7 | 87.5±21.5 | −1.90±7.10 |
| Other soft tissue tumors | 31 | 43.5±18.1 | 269.2±172.8 | 269.8±179 | 0.80±18.30 |
| P-value | – | P=0.801 | P<0.001 | P<0.001 | P<0.001 |

- Lipoma. (a) Sagittal T1, (b) short tau inversion recovery, (c) in phase, and (d) opposed phase MR images showing subcutaneous lipoma (white arrow in a,b) that demonstrates signal drop off of 46 (3.6%).

- Spindle cell lipoma. (a) Sagittal T1, (b) short tau inversion recovery, (c) in phase, and (d) opposed phase MR images showing subcutaneous spindle cell lipoma (white arrow in a,b) that demonstrates signal drop off of 107 (66%).

- Hibernoma. (a) Axial T1, (b) short tau inversion recovery, (c) in phase, and (d) opposed phase MR images showing hibernoma (black arrow in a, white arrow in b) that demonstrates signal drop off of 70 (18.7%).

- Myxoma. (a) Axial T1, (b) short tau inversion recovery, (c) in phase, and (d) opposed phase MR images showing intramuscular (white arrow in a, b) that does not demonstrate any signal drop off.

- Melanoma metastasis. (a) Axial T1, (b) short tau inversion recovery, (c) in phase, and (d) opposed phase MR images showing subcutaneous melanoma metastasis (white arrow in a,b) that demonstrates a signal increase of 13 (6.9%).
The cohort did not differ significantly in terms of age (P = 0.801). The cohort differed significantly in terms of in-phase signal intensity, out-of-phase signal intensity, and signal drop percentage on CSI (P < 0.001). Post hoc analysis demonstrated that lipoma variant dropout was statistically significantly higher than that observed in the neural tumor (P = 0.002), myxoid (P = 0.004), and other cohorts (P < 0.001). There was also a statistically significant difference between the lipoma and other cohorts (P = 0.008). Other pairs did not demonstrate a statistically significant difference; pair values are provided in Table 2.
| Variable | Lipoma | Neural | Myxoid | Other |
|---|---|---|---|---|
| Lipoma variant | P=0.093 | P=0.002*** | P=0.004*** | P<0.001*** |
| Lipoma | P=0.454 | P=0.495 | P=0.008*** | |
| Neural | P=1.000 | P=0.998 | ||
| Myxoid | P=1.000 |
Signal dropout demonstrated good ability to identify lipoma variants with an area under curve (AUC) of 0.85 (95% confidence interval [CI] = 0.69–0.99) [Figure 6]. A dropout of greater than 14% had a 75% sensitivity and 77.78% specificity.

- Area under curve (AUC) for the ability of the percentage dropout to discriminate between lipoma variant cases and other soft-tissue tumors. AUC = 0.8438.
A small number of lesion types consistently demonstrated increased signal on out-of-phase imaging compared to in-phase imaging [Figure 5]. The lesions with this finding were 4 cases of tenosynovial giant cell tumor (20 ± 14.4%), 3 cases of pilomatricomas (19 ± 8.5%), and one case of melanoma metastasis (6.9%).
ICC 2, 1 was used to calculate inter- and intraobserver reliability. Overall, there was excellent intra-observer reliability (ICC = 0.996, 95% C.I. 0.990–0.998) and inter-observer reliability (ICC 0.990, 95% C.I. 0.971–0.996).
DISCUSSION
CSI is one of the functional sequences used in musculoskeletal imaging for the differentiation of pathological marrow infiltration from normal marrow, red marrow hyperplasia, and reactive marrow edema. The role of CSI in characterizing musculoskeletal soft tissue tumors has not been assessed previously. The primary objective of our study was to determine the extent of signal drop-out in histopathological proven cases of soft tissue tumors of the musculoskeletal system. Our secondary objective was to determine the diagnostic accuracy of CSI in predicting histopathological diagnosis of musculoskeletal soft tissue tumor.
Based on the histopathological diagnosis, 80 patients in our study were grouped in 5 cohorts (lipomatous, lipomatous variant, neural, myxoid, and other soft tissue tumors) with a male-to-female ratio of 1.2 and average age 51.2 (±17.4) years. Lipoma is relatively easily to diagnose on conventional sequences involving T1 and fat suppression sequences without the aid of CSI. Lipoma variants can mimic soft tissue sarcoma and, in most scenarios, require either image-guided biopsy or excision biopsy for diagnosis. CSI can aid in the diagnosis of lipoma variants. The mean signal drop was maximum in lipoma variant cohort, followed by lipoma cohort, neural tumors cohort, myxoid tumors cohort, and other soft tissue tumor cohort. The cohort differed significantly in terms of in-phase signal intensity, out-of-phase signal intensity, and signal drop-out percentage on CSI. The signal drop off was higher in lipoma variant in comparison to lipoma which could be due to fat water interfaces which are seen in lipoma variants and not in lipomas. Signal dropout demonstrated good ability to identify lipoma variants from other musculoskeletal soft tissue tumors. Notably, some tumors such as tenosynovial giant cell tumor, melanoma metastasis, and pilomatricomas demonstrated increased signal on outof-phase imaging. The aforementioned findings are novel and have not been previously identified in published work.
Shannon et al., evaluated the added value of CSI, dynamic contrast-enhanced imaging, and diffusion-weighted imaging to conventional MRI for characterizing indeterminate lipomatous tumors. They retrospectively evaluated 32 patients with histopathologically proven lipomatous lesions and categorized the tumors on MRI with the above sequences in 3 groups (benign, intermediate/atypical lipomatous tumor, and malignant/dedifferentiated liposarcoma). They found that the diagnostic accuracy of the MRI did not improve with the addition of CSI, dynamic contrast-enhanced imaging, and diffusion-weighted imaging to conventional sequences. The authors found some potentially useful imaging features to differentiate different histopathological grades on conventional sequences and these features were the presence of thick septations and nodules.[14] We did not evaluate the role of CSI in differentiating benign from malignant tumor group and conventional MRI features such as thick septa, nodular components, enhancement, and margins are more reliable features that can help in this regard.
Nishida et al., aimed to differentiate between different types of lipomas on imaging, but the study did not utilize advanced MRI sequences.[15] ICC 2,1 was used to calculate inter- and intraobserver reliability and there was excellent intra-observer reliability and inter-observer reliability in our study.
Limitations of this work include its retrospective nature and small numbers of specific soft-tissue tumors. Prospective studies with larger sample sizes, focusing on lipoma variants and tenosynovial tumors should be performed to validate the role of CSI. Macroscopic fat, hemorrhagic/proteinaceous content, and artefacts can confound CSI interpretation. CSI performance varies by field strength (1.5 T vs. 3 T), and future studies can be planned to see the difference between the two commonly used field strengths in affecting CSI values and their role in differentiating tumor types.
CONCLUSION
CSI demonstrates promise in the evaluation of soft tissue lumps in particular lipoma variants. This is the first study to describe the features of soft-tissue musculoskeletal tumor on CSI sequences.
Ethical approval:
The research/study was approved by the Institutional Review Board at ROH, number imaging/SE/2024-25/02, dated 30th September, 2024.
Declaration of patient consent:
Patient’s consent is not required as there are no patients in this study.
Conflicts of interest:
Rajesh Botchu, Sonal Saran and Neha Nischal are on the editorial board.
Use of artificial intelligence (AI)-assisted technology for manuscript preparation:
The authors confirm that there was no use of artificial intelligence (AI)-assisted technology for assisting in the writing or editing of the manuscript and no images were manipulated using AI.
Financial support and sponsorship: Nil.
References
- Musculoskeletal tumors: How to use anatomic, functional, and metabolic MR techniques. Radiology. 2012;265:340-56.
- [CrossRef] [PubMed] [Google Scholar]
- Quantification of liver fat content with CT and MRI: State of the art. Radiology. 2021;301:250-62.
- [CrossRef] [PubMed] [Google Scholar]
- Chemical shift magnetic resonance imaging for distinguishing minimal-fat renal angiomyolipoma from renal cell carcinoma: A meta-analysis. Eur Radiol. 2018;28:1854-61.
- [CrossRef] [PubMed] [Google Scholar]
- Chemical shift MR imaging of the adrenal gland: Principles, pitfalls, and applications. Radiographics. 2016;36:414-32.
- [CrossRef] [PubMed] [Google Scholar]
- Chemical shift MRI can aid in the diagnosis of indeterminate skeletal lesions of the spine. Eur Radiol. 2016;26:932-40.
- [CrossRef] [PubMed] [Google Scholar]
- Assessment of whole spine vertebral bone marrow fat using chemical shift-encoding based water-fat MRI. J Magn Reson Imaging. 2015;42:1018-23.
- [CrossRef] [PubMed] [Google Scholar]
- Role of chemical shift and Dixon based techniques in musculoskeletal MR imaging. Eur J Radiol. 2017;94:93-100.
- [CrossRef] [PubMed] [Google Scholar]
- Adrenal masses: Quantification of fat content with double-echo chemical shift in-phase and opposed-phase FLASH MR images for differentiation of adrenal adenomas. Radiology. 2001;218:642-6.
- [CrossRef] [PubMed] [Google Scholar]
- MR imaging of adrenal masses: Value of chemical-shift imaging for distinguishing adenomas from other tumors. AJR Am J Roentgenol. 1995;164:637-42.
- [CrossRef] [PubMed] [Google Scholar]
- Fat status detection and histotypes differentiation in solid renal masses using Dixon technique. Clin Imaging. 2018;51:12-22.
- [CrossRef] [PubMed] [Google Scholar]
- Chemical shift imaging: Preliminary experience as an alternative sequence for defining the extent of a bone tumor. Quant Imaging Med Surg. 2014;4:173-80.
- [Google Scholar]
- Magnetic resonance chemical shift imaging in bone and soft tissue tumours. Int Orthop. 1997;21:9-13.
- [CrossRef] [PubMed] [Google Scholar]
- Utility of opposed-phase magnetic resonance imaging in differentiating sarcoma from benign bone lesions. J Bone Oncol. 2015;4:110-4.
- [CrossRef] [PubMed] [Google Scholar]
- Do contrast-enhanced and advanced MRI sequences improve diagnostic accuracy for indeterminate lipomatous tumors? Radiol Med. 2022;127:90-9.
- [CrossRef] [PubMed] [Google Scholar]
- Imaging characteristics of deep-seated lipomatous tumors: Intramuscular lipoma, intermuscular lipoma, and lipoma-like liposarcoma. J Orthop Sci. 2007;12:533-41.
- [CrossRef] [PubMed] [Google Scholar]
